Title Towards identification of cis-acting elements involved in the replication of enterovirus and rhinovirus RNAs: a proposal for the existence of tRNA-like terminal structures.
Author Pilipenko, E V; Maslova, S V; Sinyakov, A N; Agol, V I
Journal Nucleic Acids Res Publication Year/Month 1992-Apr
PMID 1315956 PMCID PMC312265
Affiliation 1.Institute of Poliomyelitis and Viral Encephalitides, USSR Academy of Medical Sciences, Moscow.

On the basis of a comparative analysis of published sequences, models for the secondary structure of the 3\'-terminal [poly(A)-preceding] untranslated region of the entero- and rhinovirus RNAs were worked out. The models for all these viruses share a common core element, but there are an extra enterovirus-specific element and still an additional element characteristic of a subset of enterovirus RNAs. The two latter models were verified for poliovirus and coxsackievirus B genomes by testing with single-strand and double-strand specific enzymatic and chemical probes. A tRNA-like tertiary structure model for the 3\'-terminal folding of enterovirus RNAs was proposed. A similar folding was proposed for the 3\' termini of the negative RNA strands as well as for the 5\' termini of the positive strand of all entero- and rhinovirus RNAs. Implications of these data for template recognition during negative and positive RNA strands synthesis and for the evolution of the picornavirus genomes are discussed.

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