Title Sequence and structure of human rhinoviruses reveal the basis of receptor discrimination.
Author Vlasak, Marketa; Blomqvist, Soile; Hovi, Tapani; Hewat, Elizabeth; Blaas, Dieter
Journal J Virol Publication Year/Month 2003-Jun
PMID 12768011 PMCID PMC156168
Affiliation 1.Institute of Medical Biochemistry, University of Vienna, Vienna Biocenter (VBC), A-1030 Vienna, Austria.

The sequences of the capsid protein VP1 of all minor receptor group human rhinoviruses were determined. A phylogenetic analysis revealed that minor group HRVs were not more related to each other than to the nine major group HRVs whose sequences are known. Examination of the surface exposed amino acid residues of HRV1A and HRV2, whose X-ray structures are available, and that of three-dimensional models computed for the remaining eight minor group HRVs indicated a pattern of positively charged residues within the region, which, in HRV2, was shown to be the binding site of the very-low-density lipoprotein (VLDL) receptor. A lysine in the HI loop of VP1 (K224 in HRV2) is strictly conserved within the minor group. It lies in the middle of the footprint of a single repeat of the VLDL receptor on HRV2. Major group virus serotypes exhibit mostly negative charges at the corresponding positions and do not bind the negatively charged VLDL receptor, presumably because of charge repulsion.

StrainID RV Species Serotype Length(nt) Country Year Strain Name
ANC08534 A 30 849 Finland None
ANC08539 A 31 855 Finland None
ANM08535 A 62 846 Finland None
ANP08537 A 29 843 Finland None
ANS08533 A 49 849 Finland None
ANS08538 A 47 855 Finland None
ANZ08536 A 29 843 Finland None
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